miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST025938
species: Gallus gallus
miRNA family: mir-122
source: miRBase, original name: gga-mir-122-2 (MI0001280)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGTGTGACAATGGTGTTTGT

miRNA*
AAACGCCATTATCACACTAAATA

mismatches: 4
bulges: 0

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pre-miRNA
CAGAGCTATGGAGTGTGACAATGGTGTTTGTGTCCAATCTATCAAACGCCATTATCACACTAAATAGCTACTGGTAG

dot-bracket secondary structure
(((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).)))....


SIMILARITIES
miRBase gga-mir-122-1: 5e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-122: 5e-24

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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