ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-124
source: miRBase, original name: gga-mir-124a-2 (MI0008210)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAAGGCACGCGGTGAATGCCA miRNA* CGTGTTCACAGCGGACCTTGATT mismatches: 4 bulges: 1 |
pre-miRNA
CCGAGCCTCTCTCTGCGTGTTCACAGCGGACCTTGATTTAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGAGCCTCACAGCTTCATT
dot-bracket secondary structure
..((((..(((((((.((((((((.(((..((((((((............))))))))..))).))))))))).))))))..).)))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
CCGAGCCTCTCTCTGCGTGTTCACAGCGGACCTTGATTTAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGAGCCTCACAGCTTCATT
dot-bracket secondary structure
..((((..(((((((.((((((((.(((..((((((((............))))))))..))).))))))))).))))))..).)))...........
SIMILARITIES| miRBase tgu-mir-124-3: 5e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 1e-28 |
Identical with: cfa-mir-124-3 from miRBase (MNEST026688) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
