ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-128
source: miRBase, original name: gga-mir-128-1 (MI0001217)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACAGTGAACCGGTCTCTTT miRNA* CGGGGCCGTAACACTGTCTGAGA mismatches: 6 bulges: 2 |
pre-miRNA
TGAGCTGTTGAATTCGGGGCCGTAACACTGTCTGAGAGGTTTATATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTC
dot-bracket secondary structure
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
deep sequencing data evidence
references
[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
TGAGCTGTTGAATTCGGGGCCGTAACACTGTCTGAGAGGTTTATATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTC
dot-bracket secondary structure
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).
SIMILARITIES| miRBase age-mir-128: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-128: 4e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
deep sequencing data evidence
references
[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
