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ABOUT THIS RECORD

ID: MNEST025947
species: Gallus gallus
miRNA family: mir-130
source: miRBase, original name: gga-mir-130a (MI0001241)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGTGCAATATTAAAAGGGCAT

miRNA*
GCCCTTTTTCTGTTGTACTACT

mismatches: 4
bulges: 0

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pre-miRNA
TGCTGTTGTCCAGAGCCCTTTTTCTGTTGTACTACTGGCAATTATGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGGCAG

dot-bracket secondary structure
..((((((.((((.((((((((..(((((((((.((.(((....)).).)).)))))))))..)))))))).)))).))))))


SIMILARITIES
miRBase tgu-mir-130a: 2e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-130: 3e-38

Identical with: tgu-mir-130a from miRBase (MNEST026459)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned
deep sequencing data evidence

references

[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"




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