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ABOUT THIS RECORD

ID: MNEST026135
species: Gallus gallus
miRNA family: mir-1613
source: miRBase, original name: gga-mir-1613-1 (MI0007341)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACATGCGTATATTCTGGCAG

miRNA*
AGCTGGAATGGACTGATGTAGT

mismatches: 5
bulges: 1

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pre-miRNA
TCAGACTGCTAGCTGGAATGGACTGATGTAGTGAAGATGGTGAAAACTACATGCGTATATTCTGGCAGAGAGTCTGA

dot-bracket secondary structure
(((((((.((.((..(((((.((..(((((((.............)))))))..)).)))))..))))..)))))))


SIMILARITIES
miRBase gga-mir-1613-2: 2e-38

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: gga-mir-1613-2 from miRBase (MNEST026136)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"




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