ABOUT THIS RECORDspecies: Gallus gallus
source: miRBase, original name: gga-mir-1622 (MI0007351)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACATATGATGAGTACTGATG miRNA* TTAGATCTCTCTTGTGAG mismatches: 4 bulges: 3 |
pre-miRNA
GAGCAGGCATATGGCAGAGTTAGATCTCTCTTGTGAGCGTGTGATGCATGACTACACATATGATGAGTACTGATGAGACGTGCCACATGTGCACATC
dot-bracket secondary structure
..((..((((.((((((.(((((..(((((.((((((((((.....)))).)).))))...)).)))..)))))....).))))).)))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
GAGCAGGCATATGGCAGAGTTAGATCTCTCTTGTGAGCGTGTGATGCATGACTACACATATGATGAGTACTGATGAGACGTGCCACATGTGCACATC
dot-bracket secondary structure
..((..((((.((((((.(((((..(((((.((((((((((.....)))).)).))))...)).)))..)))))....).))))).)))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
