miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST026331
species: Gallus gallus
miRNA family: mir-1803
source: miRBase, original name: gga-mir-1803 (MI0007548)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGACTTCAGCGGGGTTTGG

miRNA*
AGAGCCCATTGTAGTCAATGG

mismatches: 3
bulges: 0

View larger
pre-miRNA
GGACTTAGGGCATGATCCAGAGCCCATTGTAGTCAATGGGAGTCTTTTTCCATTGACTTCAGCGGGGTTTGGATCAGGCCTTTACTTCC

dot-bracket secondary structure
(((...(((((.(((((((((.(((.(((.((((((((((((....)))))))))))).))).))).))))))))).)))))....)))


SIMILARITIES
miRBase tgu-mir-1803: 6e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"




Liczniki na strone;