ABOUT THIS RECORDspecies: Gallus gallus
source: miRBase, original name: gga-mir-1816 (MI0007490)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAGGTTTTGTGGTTTTGTT miRNA* TTTAATCATCTCAACATGCAT mismatches: 5 bulges: 1 |
pre-miRNA
GGATGGTGAAATGATCTGAAGCTTGTAGGTTTTGTGGTTTTGTTTGACAGATTACATGTTAAATTTAATCATCTCAACATGCATCCATCAGTGTTTTACT
AATCT
dot-bracket secondary structure
((((((((((((...((((.(..((((.(((..((((((..((((((((.......))))))))..))))))...))).))))..).)))).))))))))
.))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
GGATGGTGAAATGATCTGAAGCTTGTAGGTTTTGTGGTTTTGTTTGACAGATTACATGTTAAATTTAATCATCTCAACATGCATCCATCAGTGTTTTACT
AATCT
dot-bracket secondary structure
((((((((((((...((((.(..((((.(((..((((((..((((((((.......))))))))..))))))...))).))))..).)))).))))))))
.))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM Telomerase-cil: 0.0004 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
