ABOUT THIS RECORDspecies: Gallus gallus
source: miRBase, original name: gga-mir-2127 (MI0010732)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGGAGGGGAGGGAGGGCGGG miRNA* CCCGCTTCCTCCCTTTGTCTGCGGC mismatches: 0 bulges: 6 |
pre-miRNA
CCTCCTTGTCCCGGCTCGTCCCCGCTTCCTCCCTTTGTCTGCGGCCGCCGAACAGGCCGTGTGGCGGCCGGGAGGGGAGGGAGGGCGGGCGAGAGGCAGG
GAGG
dot-bracket secondary structure
((((((((((....(((((((((.((((((((((...(((.(((((((((.((.....)).)))))))))))))))))))))))).))))))).))))))
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa
references
[1] Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T, FEBS Lett. 583:1422-1426(2009)., "High throughput sequencing of microRNAs in chicken somites"
CCTCCTTGTCCCGGCTCGTCCCCGCTTCCTCCCTTTGTCTGCGGCCGCCGAACAGGCCGTGTGGCGGCCGGGAGGGGAGGGAGGGCGGGCGAGAGGCAGG
GAGG
dot-bracket secondary structure
((((((((((....(((((((((.((((((((((...(((.(((((((((.((.....)).)))))))))))))))))))))))).))))))).))))))
))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa
references
[1] Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T, FEBS Lett. 583:1422-1426(2009)., "High throughput sequencing of microRNAs in chicken somites"
