ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-33
source: miRBase, original name: cfa-mir-33 (MI0007988)
SEQUENCE & STRUCTURE| miRNA GTGCATTGTAGTTGCATTGC miRNA* AATGTTTCCACAGTGCATCA mismatches: 3 bulges: 0 |
pre-miRNA
GTGCATTGTAGTTGCATTGCATGTTCTGGCGGTACCCGTGCAATGTTTCCACAGTGCATCA
dot-bracket secondary structure
(((((((((.(..((((((((((....((.....))))))))))))..).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GTGCATTGTAGTTGCATTGCATGTTCTGGCGGTACCCGTGCAATGTTTCCACAGTGCATCA
dot-bracket secondary structure
(((((((((.(..((((((((((....((.....))))))))))))..).)))))))))..
SIMILARITIES| miRBase bta-mir-33a: 5e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 9e-25 |
Identical with: bta-mir-33a from miRBase (MNEST033173) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
