ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-34
source: miRBase, original name: cfa-mir-34c (MI0008106)
SEQUENCE & STRUCTURE| miRNA AGGCAGTGTAGTTAGCTGATTGC miRNA* AATCACTAACCACACGGCCAGG mismatches: 4 bulges: 1 |
pre-miRNA
AGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACGGCCAGG
dot-bracket secondary structure
.(((.((((.(((((.((((((.((....)).))))))))))).)))).)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACGGCCAGG
dot-bracket secondary structure
.(((.((((.(((((.((((((.((....)).))))))))))).)))).)))...
SIMILARITIES| miRBase hsa-mir-34c: 2e-25 PMRD no hits microPC no hits | UniProt no hits RFAM mir-34: 8e-22 |
Identical with: hsa-mir-34c from miRBase (MNEST028403) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
