ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-133
source: miRBase, original name: mne-mir-133a (MI0002536)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCTGT miRNA* AGCTGGTAAAATGGAACCAAAT mismatches: 5 bulges: 0 |
pre-miRNA
ACAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCATTGA
dot-bracket secondary structure
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
ACAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCATTGA
dot-bracket secondary structure
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).
SIMILARITIES| miRBase age-mir-133a: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 1e-25 |
Identical with: sla-mir-133a from miRBase (MNEST027618) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
