ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-154
source: miRBase, original name: mne-mir-154 (MI0002600)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGTTATCCGTGTTGCCTTCG miRNA* AATCATACACGGTTGACCTATT mismatches: 5 bulges: 0 |
pre-miRNA
GAGGTACTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTTGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAA
dot-bracket secondary structure
..((((((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GAGGTACTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTTGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAA
dot-bracket secondary structure
..((((((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).))))))..
SIMILARITIES| miRBase mml-mir-154: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-36 |
Identical with: mml-mir-154 from miRBase (MNEST027765) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
