miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST028221
species: Macaca nemestrina
miRNA family: mir-181
source: miRBase, original name: mne-mir-181a-1 (MI0002941)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AACATTCAACGCTGTCGGTGAGT

miRNA*
CATCGACCGTTGATTGTACC

mismatches: 2
bulges: 3

View larger
pre-miRNA
TGAGTTTTGAGGTTGCTTCAGTGAACATTCAACGCTGTCGGTGAGTTTGGAATTAAAATCAAAACCATCGACCGTTGATTGTACCCTATGGCTAACCATC
ATCTACTCCA


dot-bracket secondary structure
.((((..((((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..))).)))).))
)...))))..



SIMILARITIES
miRBase lla-mir-181a-1: 6e-58

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-181: 3e-29

Identical with: mml-mir-181a-1 from miRBase (MNEST027767)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




Liczniki na strone;