ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-181
source: miRBase, original name: mne-mir-181a-2 (MI0002810)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACATTCAACGCTGTCGGTGAGT miRNA* CACTGACCGTTGACTGTACC mismatches: 2 bulges: 3 |
pre-miRNA
AGAAGGGCTATCAGGCCAGCCTTCAGAGGACTCCAAGGAACATTCAACGCTGTCGGTGAGTTTGGGATTTGAAAAAACCACTGACCGTTGACTGTACCTC
GGGGTCCCCA
dot-bracket secondary structure
.((((((((....)))...))))).(.(((((((.(((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))).
))))))).).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
AGAAGGGCTATCAGGCCAGCCTTCAGAGGACTCCAAGGAACATTCAACGCTGTCGGTGAGTTTGGGATTTGAAAAAACCACTGACCGTTGACTGTACCTC
GGGGTCCCCA
dot-bracket secondary structure
.((((((((....)))...))))).(.(((((((.(((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))).
))))))).).
SIMILARITIES| miRBase mml-mir-181a-2: 4e-56 PMRD no hits microPC no hits | UniProt no hits RFAM mir-181: 5e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
