ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-1247
source: miRBase, original name: ptr-mir-1247 (MI0008453)
SEQUENCE & STRUCTURE| miRNA ACCCGTCCCGTTCGTCCCCGGA miRNA* CGGGAACGTCGAGACTGGAGC mismatches: 6 bulges: 1 |
pre-miRNA
CCGCTTGCCTCGCCCAGCGCAGCCCCGGCCGCTGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTACCCCGGGAACGTCGAGACTGGAGCGCC
CGAACTGAGCCACCTTCGCGGACCCCGAGAGCGGC
dot-bracket secondary structure
(((((...((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))
))...)).)))..)).)))))....))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CCGCTTGCCTCGCCCAGCGCAGCCCCGGCCGCTGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTACCCCGGGAACGTCGAGACTGGAGCGCC
CGAACTGAGCCACCTTCGCGGACCCCGAGAGCGGC
dot-bracket secondary structure
(((((...((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))
))...)).)))..)).)))))....))))))))).
SIMILARITIES| miRBase hsa-mir-1247: 1e-72 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppy-mir-1247 from miRBase (MNEST031307) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
