ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-1248
source: miRBase, original name: ptr-mir-1248 (MI0008454)
SEQUENCE & STRUCTURE| miRNA ACCTTCTTGTATAAGCACTGTGCTAAA miRNA* TAGCAGAGTACACACAAGAAGAAAA mismatches: 8 bulges: 2 |
pre-miRNA
TTACCTTCTTGTATAAGCACTGTGCTAAAATTGCAGACACTAGGACCATGTCTTGGTTTTTGCAATAATGCTAGCAGAGTACACACAAGAAGAAAAGTAA
CAGCA
dot-bracket secondary structure
....((((((((....(.(((.(((((..((((((((.((((((((...)))))))).)))))))).....))))).))).)..))))))))........
.....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TTACCTTCTTGTATAAGCACTGTGCTAAAATTGCAGACACTAGGACCATGTCTTGGTTTTTGCAATAATGCTAGCAGAGTACACACAAGAAGAAAAGTAA
CAGCA
dot-bracket secondary structure
....((((((((....(.(((.(((((..((((((((.((((((((...)))))))).)))))))).....))))).))).)..))))))))........
.....
SIMILARITIES| miRBase hsa-mir-1248: 6e-55 PMRD no hits microPC no hits | UniProt no hits RFAM SNORA81: 6e-43 |
Identical with: ppy-mir-1248 from miRBase (MNEST031308) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
