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ABOUT THIS RECORD

ID: MNEST035043
species: Acyrthosiphon pisum
miRNA family: mir-2
source: miRBase, original name: api-mir-2a (MI0013927)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCAGCTTTGATGAGCG

miRNA*
CTCACAAAGTAACTGTGAAATG

mismatches: 5
bulges: 2

View larger
pre-miRNA
CTCACAAAGTAACTGTGAAATGTTGGTATATTGAGTCATATCACAGCCAGCTTTGATGAGCG

dot-bracket secondary structure
((((((((((..((((((.(((((.(.....).)).))).))))))...)))))).))))..


SIMILARITIES
miRBase isc-mir-2a: 0.00000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 3e-28

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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