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ABOUT THIS RECORD

ID: MNEST035050
species: Acyrthosiphon pisum
miRNA family: mir-10
source: miRBase, original name: api-mir-10 (MI0013354)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACCCTGTAGATCCGAATTTGT

miRNA*
AAATTCGGTTCTAGAGAGGTTT

mismatches: 2
bulges: 1

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pre-miRNA
ATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGAAAAACGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATA

dot-bracket secondary structure
((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).


SIMILARITIES
miRBase ame-mir-10-1: 9e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-10: 2e-26

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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