ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: mir-29
source: miRBase, original name: api-mir-29 (MI0013926)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAACCAGT miRNA* TGGTTTCGTATTGGTGCATAGA mismatches: 4 bulges: 2 |
pre-miRNA
TGGTTTCGTATTGGTGCATAGAAGTATTAATTTTGTAACTTGTCTAGCACCATTTGAAACCAGT
dot-bracket secondary structure
((((((((...((((((.((((..(((.......))).....))))))))))..))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
TGGTTTCGTATTGGTGCATAGAAGTATTAATTTTGTAACTTGTCTAGCACCATTTGAAACCAGT
dot-bracket secondary structure
((((((((...((((((.((((..(((.......))).....))))))))))..))))))))..
SIMILARITIES| miRBase fru-mir-29b-1: 0.00001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 2e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
