ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: mir-278
source: miRBase, original name: api-mir-278 (MI0013923)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGTGGGACTTTCGTTCGTTT miRNA* ACGGACGAAGGTTTCATCAATC mismatches: 5 bulges: 0 |
pre-miRNA
ACGGACGAAGGTTTCATCAATCGTGTTACAGATAAACGTGTCGGTCGGTGGGACTTTCGTTCGTTT
dot-bracket secondary structure
((((((((((((..((((.((((...(((........))).)))).))))..))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
ACGGACGAAGGTTTCATCAATCGTGTTACAGATAAACGTGTCGGTCGGTGGGACTTTCGTTCGTTT
dot-bracket secondary structure
((((((((((((..((((.((((...(((........))).)))).))))..))))))))))))..
SIMILARITIES| miRBase sko-mir-278: 0.00001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-278: 1e-30 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
