miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST035086
species: Acyrthosiphon pisum
source: miRBase, original name: api-mir-316 (MI0013933)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTCTTTTTCCGCTTTGCTGCCG

miRNA*
ACAGCAAAGTGAAAGAGACTG

mismatches: 2
bulges: 1

View larger
pre-miRNA
TGTCTTTTTCCGCTTTGCTGCCGAAGTGTAAATACGATTTGACAGCAAAGTGAAAGAGACTG

dot-bracket secondary structure
.(((((((((.(((((((((.((((.(((....))).)))).))))))))))))))))))..


SIMILARITIES
miRBase ame-mir-316: 0.000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




Liczniki na strone;