miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST035168
species: Aedes aegypti
miRNA family: mir-2
source: miRBase, original name: aae-mir-2b (MI0013512)

Taxonomy by NCBI:
Aedes aegypti Stegomyia Aedes Aedes/Ochlerotatus group Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCAGCTTTGATGAGCT

miRNA*
ACTCTCAAAGTGGCTGTGAAATG

mismatches: 1
bulges: 3

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pre-miRNA
GGGCGTATTCTAGACTCTCAAAGTGGCTGTGAAATGGTTTTATTTTGCTCATATCACAGCCAGCTTTGATGAGCTGGACTGCGCACC

dot-bracket secondary structure
(((((((.(((((.((((((((((((((((((.(((((........)).))).))))))))).)))))).)))))))).))))).))


SIMILARITIES
miRBase aga-mir-2-1: 0.000000004

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 4e-31

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Li S, Mead EA, Liang S, Tu Z, BMC Genomics. 10:581(2009)., "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs"




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