ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-25
source: miRBase, original name: ame-mir-92a (MI0005745)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGCACTTGTCCCGGCCTAT miRNA* AGGCCGAGATTTGTGACAATGT mismatches: 3 bulges: 1 |
pre-miRNA
TTATTTTGCATAGAAGATAGGCCGAGATTTGTGACAATGTTTCGTGATGATGTAATCTTCAATATTGCACTTGTCCCGGCCTATCGGAATGCATTATATT
dot-bracket secondary structure
.(((..(((((....(((((((((.(((..(((.(((((((....(((......)))...))))))))))..))).)))))))))...)))))..)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
TTATTTTGCATAGAAGATAGGCCGAGATTTGTGACAATGTTTCGTGATGATGTAATCTTCAATATTGCACTTGTCCCGGCCTATCGGAATGCATTATATT
dot-bracket secondary structure
.(((..(((((....(((((((((.(((..(((.(((((((....(((......)))...))))))))))..))).)))))))))...)))))..)))..
SIMILARITIES| miRBase ngi-mir-92a: 3e-16 PMRD no hits microPC no hits | UniProt no hits RFAM mir-92: 5e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG, Genome Biol. 8:R97(2007)., "Computational and transcriptional evidence for microRNAs in the honey bee genome"
