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ABOUT THIS RECORD
ID:
MNEST035400
species:
Apis mellifera
miRNA family:
mir-928
source:
miRBase, original name:
ame-mir-928
(
MI0005749
)
Taxonomy by NCBI:
Apis mellifera
Apis
Apini
Apinae
Apidae
Apoidea
Aculeata
Apocrita
Hymenoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGGCTGTGGAAGCTGGCGAA
miRNA*
CACCCAGTCCCCGTACAGTTACCTGTGGACCAATACCAGCACCGCGCCTGAA
mismatches:
6
bulges:
35
View larger
pre-miRNA
GTCCAGTATTC
CTGGCTGTGGAAGCTGGCGAA
CGT
CACCCAGTCCCCGTACAGTTACCTGTGGACCAATACCAGCACCGCGCCTGAA
TTAGTTGCGGGAC
dot-bracket secondary structure
((((.((((((
..(((.((((..(((((.(..
...
).....((((....((((....)))))))).....))))).))))))).)))
).....)).))))
SIMILARITIES
miRBase
nvi-mir-928
:
0.0000003
PMRD
no hits
microPC
no hits
UniProt
sp|Q02280|KCNAE_DROME: 0.000000004
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
array, RTPCR
references
[
1
] Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG,
Genome Biol. 8:R97(2007).
,
"Computational and transcriptional evidence for microRNAs in the honey bee genome"