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ABOUT THIS RECORD

ID: MNEST035533
species: Bombyx mori
miRNA family: mir-9
source: miRBase, original name: bmo-mir-79 (MI0008343)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCATAAAGCTAGATTACCAAAGCAT

miRNA*
GCTTTGGCGATTTAGCTCCGTGACAT

mismatches: 6
bulges: 0

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pre-miRNA
CGCCGCCGGGCGCGCTGCGACGCTTTGGCGATTTAGCTCCGTGACATCATTCCGTTCATAAAGCTAGATTACCAAAGCATCGCGTCGCGCCGTCTCAACG


dot-bracket secondary structure
........((((((.(((((.(((((((..((((((((..(((((........).))))..))))))))..))))))).))))).)))))).........



SIMILARITIES
miRBase bmo-mir-9b: 5e-46

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 3e-26

Identical with: bmo-mir-9b from miRBase (MNEST035520)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: RT-PCR, Solexa

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y, Insect Biochem Mol Biol. 38:1066-1071(2008)., "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system"
[3] He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y, BMC Genomics. 9:248(2008)., "Identification and characteristics of microRNAs from Bombyx mori"




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