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ABOUT THIS RECORD

ID: MNEST035579
species: Bombyx mori
miRNA family: mir-993
source: miRBase, original name: bmo-mir-993b (MI0010625)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAAGCTCGTCTCTACAGGTATAT

miRNA*
CTACCCTGTAGATCCGGGCTTTCG

mismatches: 3
bulges: 1

View larger
pre-miRNA
GGCACATTCGTGATCTACCCTGTAGATCCGGGCTTTCGTAAAAAACAAATCGAAAGCTCGTCTCTACAGGTATATCACGGCTGGCCCACGCCACCTTTTC
TACAATTAGTCAAGAACTG


dot-bracket secondary structure
(((.((..((((((.((((.((((((..((((((((((............))))))))))..)))))))))).))))))..)))))........(((..(
((....)))..))).....



SIMILARITIES
miRBase bmo-mir-993a: 7e-18

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Griffiths-Jones S, Unpublished (2009).,
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




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