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ABOUT THIS RECORD

ID: MNEST035583
species: Bombyx mori
miRNA family: mir-1175
source: miRBase, original name: bmo-mir-1175 (MI0012300)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGATTCAACTCCTCCAACTTAA

miRNA*
AAGTGGAGGTGTGATCTCTTCACT

mismatches: 3
bulges: 4

View larger
pre-miRNA
GTGACAGATTAAGTGGAGGTGTGATCTCTTCACTTTTTATGTTTAAAGTGAGATTCAACTCCTCCAACTTAACCCTGGATCG

dot-bracket secondary structure
....(((.(((((((((((..(((..(((.((((((........))))))))).)))...))))).))))))..))).....


SIMILARITIES
miRBase bmo-mir-1175: 2e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"




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