ABOUT THIS RECORDspecies: Bombyx mori
source: miRBase, original name: bmo-mir-2739 (MI0012188)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGATGTGGATATTATGGTGTGGAGG miRNA* AACATACCATGGTCTCGTAACTA mismatches: 6 bulges: 3 |
pre-miRNA
GCTGCACCTCGGGAGATGTGGATATTATGGTGTGGAGGGATAGAAACCGCGTGGCTTTAATTTCAACATACCATGGTCTCGTAACTACCAGGTGTGGC
dot-bracket secondary structure
((..(((((.((...(((.((((..(((((((((..(..((.(((.((....)).))).))..)..)))))))))))))))).....)))))))..))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RT-PCR, SOLID
references
[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
[2] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
GCTGCACCTCGGGAGATGTGGATATTATGGTGTGGAGGGATAGAAACCGCGTGGCTTTAATTTCAACATACCATGGTCTCGTAACTACCAGGTGTGGC
dot-bracket secondary structure
((..(((((.((...(((.((((..(((((((((..(..((.(((.((....)).))).))..)..)))))))))))))))).....)))))))..))
SIMILARITIES| miRBase bmo-mir-2731-1: 3e-19 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RT-PCR, SOLID
references
[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
[2] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
