miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST035660
species: Bombyx mori
miRNA family: mir-2780
source: miRBase, original name: bmo-mir-2780a-3 (MI0012406)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGGGTGTTAAATGAAGACTTAT

miRNA*
ACAGGACATCGTTTGAATGCTCGTCA

mismatches: 5
bulges: 1

View larger
pre-miRNA
CCACGGTGAAAAGGGTGTTAAATGAAGACTTATGGCTTCGGTCATATCGAAGTTAAACAGGACATCGTTTGAATGCTCGTCAAATGGA

dot-bracket secondary structure
(((...(((...(((((((((((((.(.(((.((((((((((...))))))))))...))).).))))))).)))))).)))..))).


SIMILARITIES
miRBase bmo-mir-2780a-2: 6e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2780: 1e-31

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




Liczniki na strone;