miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST036011
species: Culex quinquefasciatus
miRNA family: mir-2
source: miRBase, original name: cqu-mir-13 (MI0013571)

Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCATTTTGACGAGT

miRNA*
TCGTAAAAATGGTTGTGCCGTGTG

mismatches: 3
bulges: 2

View larger
pre-miRNA
GTTCAGTTCGTAAAAATGGTTGTGCCGTGTGTACATTTGAACATTCAATATTCATATCACAGCCATTTTGACGAGTTTGAAC

dot-bracket secondary structure
(((((..((((.((((((((((((..(((((.....((((....))))....))))))))))))))))).))))...)))))


SIMILARITIES
miRBase dwi-mir-13b-1: 0.00000000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 4e-37

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"




Liczniki na strone;