ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-9
source: miRBase, original name: cqu-mir-79 (MI0013619)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTTTGGCGCTTTAGCTGTATGA miRNA* ATAAAGCTAGATTACCAAAGCAT mismatches: 4 bulges: 0 |
pre-miRNA
TCGTCCATGCTTTGGCGCTTTAGCTGTATGATAGAATTTAATATTTCATAAAGCTAGATTACCAAAGCATGGAAG
dot-bracket secondary structure
...((((((((((((...(((((((.(((((..............))))).)))))))...))))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
TCGTCCATGCTTTGGCGCTTTAGCTGTATGATAGAATTTAATATTTCATAAAGCTAGATTACCAAAGCATGGAAG
dot-bracket secondary structure
...((((((((((((...(((((((.(((((..............))))).)))))))...))))))))))))..
SIMILARITIES| miRBase aae-mir-79: 3e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 5e-21 |
Identical with: aae-mir-79 from miRBase (MNEST035186) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
