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ABOUT THIS RECORD

ID: MNEST036019
species: Culex quinquefasciatus
miRNA family: mir-25
source: miRBase, original name: cqu-mir-92-2 (MI0013595)

Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGCACTTGTCCCGGCCT

miRNA*
GTACGGACAGGGGCAACAT

mismatches: 5
bulges: 0

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pre-miRNA
AATCTACGCATCGGTACGGACAGGGGCAACATTTTGACATTTGAAGCTAATATTGCACTTGTCCCGGCCTATGCGTGGAGT

dot-bracket secondary structure
..(((((((((.(((..(((((((.((((.(((...............))).)))).)))))))..))).)))))))))..


SIMILARITIES
miRBase cqu-mir-92-1: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-92: 6e-39

Identical with: cqu-mir-92-1 from miRBase (MNEST036018)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: Solexa

references

[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"




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