ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-190
source: miRBase, original name: cqu-mir-190-2 (MI0013597)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATATGTTTGATATTCTTGGTTG miRNA* CCCAGGAATCAAACATATTATTA mismatches: 1 bulges: 3 |
pre-miRNA
GGGTGATTCCGGTGAGATATGTTTGATATTCTTGGTTGTTAAATTTTATATTATCACCCAGGAATCAAACATATTATTACTGTGGTCATC
dot-bracket secondary structure
.((((((..((((((((((((((((((..((((((.((.(((........))).)).)))))))))))))))))).))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
GGGTGATTCCGGTGAGATATGTTTGATATTCTTGGTTGTTAAATTTTATATTATCACCCAGGAATCAAACATATTATTACTGTGGTCATC
dot-bracket secondary structure
.((((((..((((((((((((((((((..((((((.((.(((........))).)).)))))))))))))))))).))))))..))))))
SIMILARITIES| miRBase aae-mir-190: 4e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-190: 8e-45 |
Identical with: aae-mir-190 from miRBase (MNEST035197) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
