ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: mir-278
source: miRBase, original name: cqu-mir-278 (MI0013578)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGTGGGACTTTCGTCCGTTT miRNA* ACGGACGATAGTCTTCAGCGACC mismatches: 2 bulges: 1 |
pre-miRNA
AAGTTCTGGTCTTGGTGCGGACGGACGATAGTCTTCAGCGACCGTGCCATTTGAAAACCCTTTGGGTCGGTGGGACTTTCGTCCGTTTGTAACCGCCAGT
TGCAA
dot-bracket secondary structure
..((.(((((...(((((((((((((((.(((((.((.(((((.....................))))).))))))).)))))))))))).)))))))).
.))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
AAGTTCTGGTCTTGGTGCGGACGGACGATAGTCTTCAGCGACCGTGCCATTTGAAAACCCTTTGGGTCGGTGGGACTTTCGTCCGTTTGTAACCGCCAGT
TGCAA
dot-bracket secondary structure
..((.(((((...(((((((((((((((.(((((.((.(((((.....................))))).))))))).)))))))))))).)))))))).
.))..
SIMILARITIES| miRBase aae-mir-278: 0.0000000000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-278: 6e-52 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
