ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: let-7
source: miRBase, original name: ngi-let-7 (MI0016654)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGT miRNA* TGTACAACTTGCTAACTTTCC mismatches: 2 bulges: 0 |
pre-miRNA
CGACGCCTGGGTGAGGTAGTAGGTTGTATAGTGGGGAATGAAAATTCGTCATTATGGAATCCACTGTACAACTTGCTAACTTTCCCGGTTGTCGGCGC
dot-bracket secondary structure
(((((.(((((.(((.((((((((((((((((((.((((....)))).((......))..)))))))))))))))))).))).))))).)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
CGACGCCTGGGTGAGGTAGTAGGTTGTATAGTGGGGAATGAAAATTCGTCATTATGGAATCCACTGTACAACTTGCTAACTTTCCCGGTTGTCGGCGC
dot-bracket secondary structure
(((((.(((((.(((.((((((((((((((((((.((((....)))).((......))..)))))))))))))))))).))).))))).)))))....
SIMILARITIES| miRBase nvi-let-7: 8e-51 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-40 |
Identical with: nvi-let-7 from miRBase (MNEST037629) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
