ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: mir-25
source: miRBase, original name: ngi-mir-92a (MI0016648)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGCACTTGTCCCGGCCTAT miRNA* AGGTCGAGATTGGTGGCAATGT mismatches: 2 bulges: 1 |
pre-miRNA
TTGCATAAAAGATAGGTCGAGATTGGTGGCAATGTTTCGTAATGGTTTTCCCTCAATATTGCACTTGTCCCGGCCTATCGGAATGCACTAATAT
dot-bracket secondary structure
.(((((....(((((((((.(((.((((.(((((((.......((....))...))))))))))).))).)))))))))...))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
TTGCATAAAAGATAGGTCGAGATTGGTGGCAATGTTTCGTAATGGTTTTCCCTCAATATTGCACTTGTCCCGGCCTATCGGAATGCACTAATAT
dot-bracket secondary structure
.(((((....(((((((((.(((.((((.(((((((.......((....))...))))))))))).))).)))))))))...))))).......
SIMILARITIES| miRBase nlo-mir-92a: 3e-47 PMRD no hits microPC no hits | UniProt no hits RFAM mir-92: 5e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
