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ABOUT THIS RECORD

ID: MNEST037579
species: Nasonia giraulti
miRNA family: mir-133
source: miRBase, original name: ngi-mir-133 (MI0016653)

Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGTCCCCTTCAACCAGCTGT

miRNA*
AGCTGGTTGAACACGGGTCAAAT

mismatches: 5
bulges: 1

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pre-miRNA
TAATGTTAAGCTTAGCTGGTTGAACACGGGTCAAATATAACGCACGATTGACGCATTTGGTCCCCTTCAACCAGCTGTAGTTGACATTA

dot-bracket secondary structure
(((((((((.((((((((((((((...((..(((((....((((....)).)).)))))..))..)))))))))))).)))))))))))


SIMILARITIES
miRBase nlo-mir-133: 2e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 3e-41

Identical with: nlo-mir-133 from miRBase (MNEST037611)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"




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