ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: mir-305
source: miRBase, original name: ngi-mir-305 (MI0016644)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGTACTTCATCAGGTGCTCTG miRNA* GGTGCCTGTTGGAGCGCAATTC mismatches: 7 bulges: 0 |
pre-miRNA
GGAGGCTGCATGTTAATTGTACTTCATCAGGTGCTCTGGTGATTTTGATACCCGGTGCCTGTTGGAGCGCAATTCATATGATTGTGCC
dot-bracket secondary structure
...(((..(((((.(((((..(((((.((((..((..((((.......)))).))..)))).)))))..))))).))))).....)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
GGAGGCTGCATGTTAATTGTACTTCATCAGGTGCTCTGGTGATTTTGATACCCGGTGCCTGTTGGAGCGCAATTCATATGATTGTGCC
dot-bracket secondary structure
...(((..(((((.(((((..(((((.((((..((..((((.......)))).))..)))).)))))..))))).))))).....)))
SIMILARITIES| miRBase nlo-mir-305: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-305: 1e-28 |
Identical with: nlo-mir-305 from miRBase (MNEST037622) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
