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ABOUT THIS RECORD

ID: MNEST038099
species: Brugia malayi
miRNA family: mir-9
source: miRBase, original name: bma-mir-9 (MI0013326)

Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTTGGTTATCTAGCTGTATGA

miRNA*
ATAAAGCTAGGTTACCAAAGCT

mismatches: 2
bulges: 0

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pre-miRNA
GTATTGCAACTTTACTTTGGTTATCTAGCTGTATGAGTAAGTTACTGGCTTCATAAAGCTAGGTTACCAAAGCTAAGCACAATAC

dot-bracket secondary structure
((((((...(((..(((((((.((((((((.(((((((.((...)).)).))))).)))))))).)))))))..)))..))))))


SIMILARITIES
miRBase bma-mir-79: 4e-43

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 4e-28

Identical with: bma-mir-79 from miRBase (MNEST038107)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"




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