ABOUT THIS RECORDspecies: Schistosoma mansoni
miRNA family: mir-125_2
source: miRBase, original name: sma-mir-125a (MI0010676)
Taxonomy by NCBI:
Schistosoma mansoni Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTTTGATTGCC miRNA* CAGCCAAAGTGACTCAGGTATG mismatches: 6 bulges: 0 |
pre-miRNA
GCTCCCTGAGACCCTTTGATTGCCTTGTTATTACAATACTGTACATAACATGATCAGGCAGCCAAAGTGACTCAGGTATGCA
dot-bracket secondary structure
((..((((((.(.(((((..(((((((((((((((....)))).)))))).....)))))..))))).).))))))...)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
GCTCCCTGAGACCCTTTGATTGCCTTGTTATTACAATACTGTACATAACATGATCAGGCAGCCAAAGTGACTCAGGTATGCA
dot-bracket secondary structure
((..((((((.(.(((((..(((((((((((((((....)))).)))))).....)))))..))))).).))))))...)).
SIMILARITIES| miRBase sja-mir-125a: 0.0000002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
