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ABOUT THIS RECORD

ID: MNEST039044
species: Schmidtea mediterranea
source: miRBase, original name: sme-lin-4 (MI0005125)

Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCCTGAGACCTTCGACTGTGT

miRNA*
ACAGTCGATGATCATAGGGTTA

mismatches: 4
bulges: 0

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pre-miRNA
ATCAGTTATAATCTCCCTGAGACCTTCGACTGTGTTTGACCATTAAATTATCAGAAATGATTGCACAGTCGATGATCATAGGGTTAAAATAGCCGAT

dot-bracket secondary structure
(((.(((((.....(((((.((.(.((((((((((..............((((....)))).)))))))))).).)).))))).....))))).)))


SIMILARITIES
miRBase sme-lin-4: 3e-50

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern, 454, Solexa

references

[1] Palakodeti D, Smielewska M, Graveley BR, RNA. 12:1640-1649(2006)., "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology"
[2] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
[3] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"




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