ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR166
source: miRBase, original name: pab-MIR166b (MI0016119)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTT miRNA* GGAATGAAACCTGGGTCAAGA mismatches: 5 bulges: 0 |
pre-miRNA
TTTCAGAGTTGGGATATCGGGAATGAAACCTGGGTCAAGATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCAAA
CTCTTTAAGTACTGCTGCTCAATTGAAAA
dot-bracket secondary structure
((((((((((.((((.(.(((((((((.(((((..(.(((((((((...(((.....)))..))))))))).)..))))).))))))))).).)))).))
)))....((((....))))....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TTTCAGAGTTGGGATATCGGGAATGAAACCTGGGTCAAGATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCAAA
CTCTTTAAGTACTGCTGCTCAATTGAAAA
dot-bracket secondary structure
((((((((((.((((.(.(((((((((.(((((..(.(((((((((...(((.....)))..))))))))).)..))))).))))))))).).)))).))
)))....((((....))))....))))).
SIMILARITIES| miRBase mtr-MIR166b: 0.00000003 PMRD pga-miR166: 2e-36 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 0.0000005 |
Identical with: pga-miR166 from PMRD (MNEST051336) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
