ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR396
source: miRBase, original name: pab-MIR396a (MI0016122)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTA miRNA* GCTCAAGAAAGCTGTGGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
AATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGGCGGATTCG
dot-bracket secondary structure
....((((((((...(((((((((((((((((.((..(((..(((((....)))))..)))..)).)))))))))))))))))...))).))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
AATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGGCGGATTCG
dot-bracket secondary structure
....((((((((...(((((((((((((((((.((..(((..(((((....)))))..)))..)).)))))))))))))))))...))).))))).....
SIMILARITIES| miRBase tcc-MIR396c: 0.000000005 PMRD ath-miR396b: 0.00000002 microPC miR396: 7e-33 | UniProt no hits RFAM MIR396: 0.00000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
