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ABOUT THIS RECORD

ID: MNEST039383
species: Picea abies
miRNA family: MIR482
source: miRBase, original name: pab-MIR482a (MI0016126)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTACTCCTCCCATTCC

miRNA*
AGTGGAAGGATAGGGTAAGACT

mismatches: 1
bulges: 2

View larger
pre-miRNA
TTGGAGGAGTGGAAGGATAGGGTAAGACTGCGGTTAAGTGAGTCTGCTTCAATAATTCTTTGCTCTAATCTCACCAGTCTTCCCTACTCCTCCCATTCCT
GTTGCCTTCATCACAGTT


dot-bracket secondary structure
....((((((((.(((((((((.(((((((.......(((((...((..............))......))))))))))))))))).)))).))))))))
..................



SIMILARITIES
miRBase pab-MIR482b: 0.000000006

PMRD pta-miR482c: 0.00000002

microPC miR482: 6e-46
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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