ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR482
source: miRBase, original name: pab-MIR482c (MI0016128)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCTACTCCTCCCATTCC miRNA* AGTGGGAGCAGAGGATAAGACT mismatches: 1 bulges: 2 |
pre-miRNA
TGAGAAGGGAATGGATGTGTTTTGTGGATGGAAGTCTTGAGGAGTGGGAGCAGAGGATAAGACTGCTGCTTTGAATATTATCAGTCTTTCCTACTCCTCC
CATTCCTATTGGCTTCACCACACATCCCTTCCCAACG
dot-bracket secondary structure
......(((((.((((((((.....((...((((((...(((((((((((.((((((.(((((((.((..........)).))))))))))).)).))))
)))))))...)))))).)))))))))).)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TGAGAAGGGAATGGATGTGTTTTGTGGATGGAAGTCTTGAGGAGTGGGAGCAGAGGATAAGACTGCTGCTTTGAATATTATCAGTCTTTCCTACTCCTCC
CATTCCTATTGGCTTCACCACACATCCCTTCCCAACG
dot-bracket secondary structure
......(((((.((((((((.....((...((((((...(((((((((((.((((((.(((((((.((..........)).))))))))))).)).))))
)))))))...)))))).)))))))))).)))))....
SIMILARITIES| miRBase vvi-MIR482: 0.000000002 PMRD vvi-miR482: 0.000000002 microPC miR482: 1e-31 | UniProt no hits RFAM no hits |
Identical with: miR482 from microPC (MNEST046004) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
