ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR947
source: miRBase, original name: pab-MIR947 (MI0016130)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCGGAATCTGTTACTGTTTC miRNA* CGCAGCAGCAGATTCTGATAGA mismatches: 2 bulges: 0 |
pre-miRNA
TGTTTTGTATCGGAATCTGTTACTGTTTCTTAGGCCTCAAGCAACTATGGAAATCCCTGGAGGCTGCTGCATCATACGCCTCAGACGCAGCAGCAGATTC
TGATAGAAGACTCAGGCAACGCATTTGTCGTTG
dot-bracket secondary structure
.(((((.((((((((((((((.((((.(((.(((((...(((..(((.((....)).)))..)))...)........)))).))).)))).)))))))))
))))).))))).....((((((....).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TGTTTTGTATCGGAATCTGTTACTGTTTCTTAGGCCTCAAGCAACTATGGAAATCCCTGGAGGCTGCTGCATCATACGCCTCAGACGCAGCAGCAGATTC
TGATAGAAGACTCAGGCAACGCATTTGTCGTTG
dot-bracket secondary structure
.(((((.((((((((((((((.((((.(((.(((((...(((..(((.((....)).)))..)))...)........)))).))).)))).)))))))))
))))).))))).....((((((....).)))))
SIMILARITIES| miRBase pta-MIR947: 3e-17 PMRD pta-miR947: 3e-17 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
