miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST039389
species: Picea abies
miRNA family: miR950-5p
source: miRBase, original name: pab-MIR950 (MI0016094)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACATCTGGGCCACGATGGTT

miRNA*
CCATGGTGCCCCAGATGAGAAG

mismatches: 3
bulges: 0

View larger
pre-miRNA
GCACGAGGGAACGGAGGAAGGGACGGTGTTCTTCAAGTGGAGGGAGAAAGAGGTTTTGGAGGTGATCTTCACATCTGGGCCACGATGGTTTATTTTTCTT
CGTTTATTTATCATAAACCATGGTGCCCCAGATGAGAAGAGCACCTTCGCCTCCGTTTATTTACATGGATTTGACTGTTTCTGGAGGAACCGGCAGTCCA
TCTCCATTTGGGTATTTTCTCTGCCGAAATGGTGTAGATCATTTCATCCTCTCCTCTTGTCAGACTCTGCCAGTTGATCTGGAGGAAGAAGAAGAATCTG
AAGCGAAAGTGTTATTGTCGTCTGGGCCCCGGTGGTTTATGATCGTCTAGGATGTTCAGAACCACCGTGGCCAAGACGACAAGAATACCCTCGTCTTTGC
TTACATGGATCTCGGCAAACTTGACTCCTCAAATAGAA


dot-bracket secondary structure
....((((....((((((..(((.............(..(((..((...(((((...(((((((.(((((.((((((((.(((.(((((((((.......
............))))))))).))).)))))))).))))).))))))))))))....((((((.(((((..((((((...((((.....)))))))).))
..))))).))))))))..)))..).((((((((....)))))))).)))..)))))).(((((....((((....((((((.(((....(((....)))(
((((((..(((((.(((((((((.((((.(((((((((.(((.((((...)))).)))))))))))).)))).))))))))).)))))..))).)))).)
))...))))))..))))...))))).))))........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




Liczniki na strone;