miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST039392
species: Picea abies
miRNA family: MIR1311
source: miRBase, original name: pab-MIR1311 (MI0016132)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGAGTTTTGCCAGTTCCGCC

miRNA*
CGCACTGGCATAACTCTGACC

mismatches: 2
bulges: 1

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pre-miRNA
GGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCCT

dot-bracket secondary structure
((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).))))


SIMILARITIES
miRBase pta-MIR1311: 0.000000000001

PMRD pta-miR1311: 0.000000000001

microPC miR1311: 8e-26
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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