ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR160
source: miRBase, original name: bra-MIR160a (MI0010650)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCATGCATA mismatches: 3 bulges: 0 |
pre-miRNA
TATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCA
TGCATATTTTCATATACATTTACATAC
dot-bracket secondary structure
..(((((((.((((((.((...((((((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..)))))))
.))))))..)).)))))).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
TATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCA
TGCATATTTTCATATACATTTACATAC
dot-bracket secondary structure
..(((((((.((((((.((...((((((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..)))))))
.))))))..)).)))))).))))))).
SIMILARITIES| miRBase aly-MIR160a: 2e-24 PMRD bra-miR160a: 5e-68 microPC miR160: 2e-39 | UniProt no hits RFAM mir-160: 3e-20 |
Identical with: miR160 from microPC (MNEST046225) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
